Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
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Accession | GR:0060045 | ||||||||||
Gene Symbol | AMY2A | ||||||||||
Gene Name | ALPHA-AMYLASE 2A | ||||||||||
Synonyms (9) |
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E.C. Numbers (1) | 3.2.1.1 | ||||||||||
Pathway Reactions (4) |
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Chromosome No. | 6 | ||||||||||
Gene Type | CDS (Protein coding) | ||||||||||
Has Phenotype | not curated | ||||||||||
Description | under curation |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 30,261,780-30,265,917bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 6 | 143.7-143.7cM | View Comparative Map | |||
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JRGP RFLP 2000 | BNL6.32 | 6 | 123.6-123.6cM | View Comparative Map | ||||
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QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 178.8-178.8cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 143.7-143.7cM | View Comparative Map | ||||
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IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 148.4-148.4cM | View Comparative Map | ||||
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Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 178.5-178.5cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 6 | 134-134cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 6 | 111-111cM | View Comparative Map | ||||
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BNL6.32 | 9 | 38.5-54.45cM | View Comparative Map | |||||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 6 | 123.6 cM | 123.6 cM | jrgp-2000-6-ip27 |
2 | Cornell IR64/Azu DH QTL 2001 | 6 | 143.7 cM | 143.7 cM | cou2001a-444 |
3 | Cornell SSR 2001 | 6 | 143.7 cM | 143.7 cM | cu-dh-2001-6-55 |
4 | Cornell RFLP 1994 | 6 | 134 cM | 134 cM | cu-sl-1994-6-43 |
5 | Cornell RFLP 2001 | 6 | 111 cM | 111 cM | cu-sl-2001-6-56 |
6 | Zejiang IR64/Azu DH QTL 2001 | 6 | 178.5 cM | 178.5 cM | licy2001a-83 |
7 | IRRI IR64/Azu DH QTL 2003 | 6 | 148.4 cM | 148.4 cM | raj2003a-201 |
8 | CIRAD IR64/Azu DH QTL 2003 | 6 | 178.8 cM | 178.8 cM | sac2003a-204 |
9 | Rice japonica MSU6 | Chr. 6 | 30261780 bp | 30265917 bp | grjp2009a-6-GR:0060045 |
Cellular Component | cellular_component (GO:0005575), cytoplasmic membrane-bounded vesicle (GO:0016023) |
Molecular Function | alpha-amylase activity (GO:0004556) |
Biological Process | starch catabolic process (GO:0005983), sucrose catabolic process (GO:0005987), secretion by cell (GO:0032940) |
Environment | unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 30,261,780 | 30,265,917 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr6 | 30,261,780 | 30,265,917 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 30,261,780 | 30,265,917 | Huang X, et al, Nat Genetics 2010 Nov... | 25 | Search for SNPs |
chr6 | 30,261,780 | 30,265,917 | RiceDiversity 44K SNP assay, 34 trait... | 25 | Search for SNPs |
chr6 | 30,261,780 | 30,265,917 | RiceDiversity 44K SNP assay, 34 trait... | 0 |