![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Gene Home |
Search |
|
Submit |
Help |
Tutorial |
FAQ | Release Notes
Oryza sativa gene "ACS1" (GR:0060004) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Accession | GR:0060004 | ||||||||
| Gene Symbol | ACS1 | ||||||||
| Gene Name | ACC SYNTHASE 1 | ||||||||
| Synonyms (7) |
|
||||||||
| E.C. Numbers (1) | 4.4.1.14 | ||||||||
| Pathway Reactions (3) |
|
||||||||
| Chromosome No. | 3 | ||||||||
| Gene Type | CDS (Protein coding) | ||||||||
| Has Phenotype | not curated | ||||||||
| Description | Encodes for the enzyme 1-aminocyclopropane-1-carboxylate synthase 1. It is a key enzyme in ethylene biosynthesis. Expression is induced within 12 hrs of partial submergence and low oxygen concentration (anaerobic condition). |
Alleles (1) Germplasm (1) Sequences (6) | Protein |
|
||||||
|---|---|---|---|---|---|---|---|
| Nucleotide (DNA) |
|
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 29,653,702-29,655,967bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 2001 | BNL6.32 | 3 | 107.45-107.45cM | View Comparative Map | |||
|
||||||||
Gene Map Positions (2) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Cornell RFLP 2001 | 3 | 107.45 cM | 107.45 cM | cu-sl-2001-3-117 |
| 2 | Rice japonica MSU6 | Chr. 3 | 29653702 bp | 29655967 bp | grjp2009a-3-GR:0060004 |
Associated Ontologies (4) | Cellular Component | cytoplasm (GO:0005737) |
| Molecular Function | transaminase activity (GO:0008483), 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847) |
| Biological Process | biosynthetic process (GO:0009058) |
Associated QTL (0)
Database Cross-References (1) Literature (3) Images (0)
SNPs (15) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 29,653,702 | 29,655,967 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr3 | 29,653,702 | 29,655,967 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 29,653,702 | 29,655,967 | Huang X, et al, Nat Genetics 2010 Nov... | 7 | Search for SNPs |
| chr3 | 29,653,702 | 29,655,967 | RiceDiversity 44K SNP assay, 34 trait... | 7 | Search for SNPs |
| chr3 | 29,653,702 | 29,655,967 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
