Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
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Accession | GR:0020145 | ||||||
Gene Symbol | tdr | ||||||
Gene Name | Tapetum degeneration retardation | ||||||
Synonyms (6) |
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E.C. Numbers (0) | |||||||
Pathway Reactions (0) | |||||||
Chromosome No. | 2 | ||||||
Gene Type | CDS (Protein coding) | ||||||
Has Phenotype | yes | ||||||
Description | Also identified as a member of the bHLH family by computational analyses. Basic/helix-loop-helix (bHLH) transcription factors are known to play a role in the specification of tissue types ihn animals. The bHLH domain is approximately 60aa in size and consists of a basic region and a helix-loop-helix region. The helix-loop-helix region contains two amphipathic alpha helices. | ||||||
Curator Comment | Information based upon bioinformatic analysis of the Basic/Helix-Loop-Helix transcription factor in Rice and Arabidopsis. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 1,073,551-1,076,776bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 2 | 1073551 bp | 1076776 bp | grjp2009a-2-GR:0020145 |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | DNA binding (GO:0003677), transcription regulator activity (GO:0030528) |
Biological Process | GO:0045449 (GO:0045449), anther development (GO:0048653), anther morphogenesis (GO:0048654), anther wall tapetum cell differentiation (GO:0048657) |
Environment | green house study (EO:0007248) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr2 | 1,073,551 | 1,076,776 | ~160K SNPs x 20 accessions (McNally 2... | 5 | Search for SNPs |
chr2 | 1,073,551 | 1,076,776 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 1,073,551 | 1,076,776 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr2 | 1,073,551 | 1,076,776 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr2 | 1,073,551 | 1,076,776 | RiceDiversity 44K SNP assay, 34 trait... | 0 |