Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
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Accession | GR:0020094 | ||||||
Gene Symbol | saur12 | ||||||
Gene Name | Small Auxin-Up RNA 12 | ||||||
Synonyms (5) |
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E.C. Numbers (0) | |||||||
Pathway Reactions (0) | |||||||
Chromosome No. | 2 | ||||||
Gene Type | CDS (Protein coding) | ||||||
Has Phenotype | |||||||
Description | Members of the Small Auxin-Up RNA (SAUR)family are specifically induced within minutes of auxin application. Additionally SAURs can be upregulated upon the application of the translational inhibitor cycloheximide; this suggests that the transcription of SAURs is regulated by short lived repressors. SAUR genes were initially identified in Soybean, and since then have been identified in Arabidopsis (over 70 members), Mung bean, Pea, Tobacco and maize. SAUR proteins are able to bind to calmodulin in vitro, suggesting that they may act as a link between Calcium/Calmodulin second messengers and auxin signalling. | ||||||
Curator Comment | Nearest marker: S13245 Contains a predicted Nuclear Localisation Signal. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 15,252,719-15,255,459bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 2 | 15252719 bp | 15255459 bp | grjp2009a-2-GR:0020094 |
Cellular Component | mitochondrion (GO:0005739) |
Molecular Function | calmodulin binding (GO:0005516) |
Biological Process | auxin mediated signaling pathway (GO:0009734), response to stimulus (GO:0050896) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr2 | 15,252,719 | 15,255,459 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 15,252,719 | 15,255,459 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 15,252,719 | 15,255,459 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr2 | 15,252,719 | 15,255,459 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr2 | 15,252,719 | 15,255,459 | RiceDiversity 44K SNP assay, 34 trait... | 0 |