Oryza sativa gene "ga2ox-1" (GR:0020077)

Genes

Browse Ontology Database by: Trait \| Plant Structure \| Growth Stage
Find:	In:	Type:	Species:	With Phenotype

E.g., d1, dwarf-1, GR:0060184, flower*, *tillering stage* Or view help

Oryza sativa gene "ga2ox-1" (GR:0020077)

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Accession

GR:0020077

Gene Symbol

ga2ox-1

Gene Name

Gibberellin 2-oxidase 1

Synonyms (5)

OSJNBa0017J22.4	OsGA2ox-1
ga2ox	ga2ox 1
LOC_Os05g06670

E.C. Numbers (1)

1.14.11.13

Pathway Reactions (2)

Isopenicillin-N synthase

RXN-115

Chromosome No.

Gene Type

CDS (Protein coding)

Has Phenotype

yes

Description

Inactivates bioactive GA1/GA4 and their precursers GA20/GA9

Alleles (1)

ga2ox-1

Germplasm (1)

Nipponbare

Sequences (4)

Protein

Gramene Protein:

Q5W726

Nucleotide (DNA)

GenBank Nucleotide:	AC119288
Rice Ensembl Gene:	LOC_Os05g06670
IRGSP Gene:	Os05g0158600

Gene-To-Gene Interactions (0)

Gene Interactions (0)

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 5

3,459,593-3,465,968bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 5	3459593 bp	3465968 bp	grjp2009a-5-GR:0020077

Associated Ontologies (5)

Molecular Function	iron ion binding (GO:0005506), isopenicillin-N synthase activity (GO:0016216)
Biological Process	gibberellin metabolic process (GO:0009685), antibiotic biosynthetic process (GO:0017000)
Environment	green house study (EO:0007248)

Associated QTL (0)

Database Cross-References (0)

Literature (1)

Sakamoto-T, Miura-K, Itoh-H, Tatsumi-T, Ueguchi-Tanaka-M, Ishiyama-K, Kobayashi-M, Agrawal-G-K, Takeda-S, Abe-K, Miyao-A, Hirochika-H, Kitano-H, Ashikari-M, Matsuoka-M., "An overview of gibberellin metabolism enzyme genes and their related mutants in rice", Plant physiology, 2004, vol. 134, pp. 1642-1653

Images (0)

SNPs (18)

Chr	Start	Stop	Exp	Num. SNP Positions
chr5	3,459,593	3,465,968	~160K SNPs x 20 accessions (McNally 2...	0
chr5	3,459,593	3,465,968	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr5	3,459,593	3,465,968	Huang X, et al, Nat Genetics 2010 Nov...	9	Search for SNPs
chr5	3,459,593	3,465,968	RiceDiversity 44K SNP assay, 34 trait...	9	Search for SNPs
chr5	3,459,593	3,465,968	RiceDiversity 44K SNP assay, 34 trait...	0