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Oryza sativa gene "KS4" (GR:0020070) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | GR:0020070 | ||||||||||||||||
| Gene Symbol | KS4 | ||||||||||||||||
| Gene Name | Ent-kaurene synthase 4 | ||||||||||||||||
| Synonyms (13) |
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| E.C. Numbers (0) | |||||||||||||||||
| Pathway Reactions (1) | RXN4KF-52 | ||||||||||||||||
| Chromosome No. | 4 | ||||||||||||||||
| Gene Type | CDS (Protein coding) | ||||||||||||||||
| Has Phenotype | yes | ||||||||||||||||
| Description | The gene encodes for the enzyme syn-pimara-7,15-diene synthase. It catalyzes the conversion of ent-copalyl diphosphate (ent-CDP) into 9-beta-H-Primara-7,15-diene, an intermediate in the Momilactone A and B type of diterpene phytoalexin metabolism. Gibberellin mutants are associated with dwarfism. |
Alleles (1) Germplasm (1) Sequences (10) | Protein |
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| Nucleotide (DNA) |
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Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 5,423,779-5,429,469bp | View Comparative Map | |||
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Gene Map Positions (1) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Rice japonica MSU6 | Chr. 4 | 5423779 bp | 5429469 bp | grjp2009a-4-GR:0020070 |
Associated Ontologies (15) | Trait | growth and development trait (TO:0000357), enzyme activity trait (TO:0000599) |
| Plant Growth and Development Stage | whole plant development stage (PO:0007033), leaf production stage (PO:0007133), sporophyte vegetative stage (PO:0007134) |
| Cereal Plant Growth Stage | rice growth stage (GRO:0007040), 02-seedling (GRO:0007047), A-vegetative stage (GRO:0007139) |
| Cellular Component | plastid (GO:0009536) |
| Molecular Function | ent-kaurene synthase activity (GO:0009899), syn-pimara-7,15-diene synthase activity (GO:0034279) |
| Biological Process | metabolic process (GO:0008152), diterpene phytoalexin metabolic process (GO:0051501) |
| Environment | laboratory study (EO:0007255), watering regimen (EO:0007383) |
Associated QTL (0)
Database Cross-References (0)
Literature (6) Images (0)
SNPs (32) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 5,423,779 | 5,429,469 | ~160K SNPs x 20 accessions (McNally 2... | 6 | Search for SNPs |
| chr4 | 5,423,779 | 5,429,469 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr4 | 5,423,779 | 5,429,469 | Huang X, et al, Nat Genetics 2010 Nov... | 11 | Search for SNPs |
| chr4 | 5,423,779 | 5,429,469 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |
| chr4 | 5,423,779 | 5,429,469 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
