Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
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Accession | GR:0020066 | ||||||||||||
Gene Symbol | CPS4 | ||||||||||||
Gene Name | ent-copalyl diphosphate synthase 4 | ||||||||||||
Synonyms (12) |
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E.C. Numbers (0) | |||||||||||||
Pathway Reactions (1) | RXN4KF-51 | ||||||||||||
Chromosome No. | 4 | ||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||
Has Phenotype | yes | ||||||||||||
Description | Even though the gene name suggests ent-copalyl diphosphate synthase, the gene encodes for the enzyme syn-copalyl diphosphate synthase which convert trans-geranylgeranyl diphosphate (GGDP) into syn-copalyl diphosphate (syn-CDP). Gibberellin mutants are associated with dwarfism. | ||||||||||||
Curator Comment | KEGG Number 00904 (Diterpenoid biosynthesis - Reference pathway) |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 5,313,501-5,321,868bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 4 | 5313501 bp | 5321868 bp | grjp2009a-4-GR:0020066 |
Trait | growth and development trait (TO:0000357), enzyme activity trait (TO:0000599) |
Plant Growth and Development Stage | whole plant development stage (PO:0007033), sporophyte vegetative stage (PO:0007134) |
Cereal Plant Growth Stage | rice growth stage (GRO:0007040), A-vegetative stage (GRO:0007139) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | syn-copalyl diphosphate synthase activity (GO:0051498) |
Biological Process | metabolic process (GO:0008152), gibberellin metabolic process (GO:0009685), diterpene phytoalexin precursor biosynthetic process pathway (GO:0051504) |
Environment | Magnaporthe grisea (EO:0007226), laboratory study (EO:0007255), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr4 | 5,313,501 | 5,321,868 | ~160K SNPs x 20 accessions (McNally 2... | 5 | Search for SNPs |
chr4 | 5,313,501 | 5,321,868 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 5,313,501 | 5,321,868 | Huang X, et al, Nat Genetics 2010 Nov... | 8 | Search for SNPs |
chr4 | 5,313,501 | 5,321,868 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |
chr4 | 5,313,501 | 5,321,868 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |