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Oryza sativa gene "ckx5" (GR:0020054) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
|---|---|---|---|---|---|---|---|
| Accession | GR:0020054 | ||||||
| Gene Symbol | ckx5 | ||||||
| Gene Name | Putative cytokinin oxidase 5 | ||||||
| Synonyms (5) |
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| E.C. Numbers (1) | 1.5.99.12 | ||||||
| Pathway Reactions (6) |
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| Chromosome No. | 1 | ||||||
| Gene Type | CDS (Protein coding) | ||||||
| Has Phenotype | no | ||||||
| Description | Cytokinin oxidase/dehydrogenase enzymes (CKX) are reponsible for the majority of cytokinin catabolism. | ||||||
| Curator Comment | Members of the CKX family are posttranslationally modifies by glycosylation. In addition, CKX members contain the cofactor FAD. |
Alleles (1) Germplasm (1) Sequences (5) | Protein |
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| Nucleotide (DNA) |
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Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 32,787,443-32,791,707bp | View Comparative Map | |||
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Gene Map Positions (1) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Rice japonica MSU6 | Chr. 1 | 32787443 bp | 32791707 bp | grjp2009a-1-GR:0020054 |
Associated Ontologies (6) | Cellular Component | plastid (GO:0009536), cytoplasmic membrane-bounded vesicle (GO:0016023) |
| Molecular Function | oxidoreductase activity (GO:0016491), cytokinin dehydrogenase activity (GO:0019139) |
| Biological Process | electron transport chain (GO:0022900), secretion by cell (GO:0032940) |
Associated QTL (0)
Database Cross-References (0)
Literature (3) Images (0)
SNPs (22) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 32,787,443 | 32,791,707 | ~160K SNPs x 20 accessions (McNally 2... | 10 | Search for SNPs |
| chr1 | 32,787,443 | 32,791,707 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 32,787,443 | 32,791,707 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr1 | 32,787,443 | 32,791,707 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr1 | 32,787,443 | 32,791,707 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
