Oryza sativa Germplasm "Lacrosse"

Accession Name	Lacrosse
Institute(s) Holding Accession	NSGC
Accession Number	GSOR301092
Synonym(s)
Germplasm Type	Breeding/research material
Genus	Oryza
Species	sativa
Subspecies
Subtaxa
Taxonomy Cross-Reference	GR_tax:013681

Experiments (4)

Title	Design	Polymorphism Type	PI(s)	Comments	Data
'1536 chip' - 1311 SNPs x 395 rice accessions (Zhao et. al, PLoS, 2010; ricediversity.org). MSU6 coordinates	Genotyping of 395 O. sativa accessions with 1536 SNPs	N/A	Zhao K et. al.; ricediversity.org	Reference: Zhao K et. al., PLoS One, May 2010 vol 5, issue 5	Show Allele Data
'1536 chip' - 1311 SNPs x 395 rice accessions (Zhao et. al, PLoS, 2010; ricediversity.org). MSU7 coordinates	Genotyping of 395 O. sativa accessions with 1536 SNPs	N/A	Zhao K et. al.; ricediversity.org	Reference: Zhao K et. al., PLoS One, May 2010 vol 5, issue 5. LiftOver from MSU6->MSU7, 3/2012	Show Allele Data
RiceDiversity 44K SNP assay, 34 trait GWAS study, Nat Comm Sept 2011. MSU6 coordinates	A genome-wide association study based on genotyping 44,100 SNP variants across 413 diverse accessions of O. sativa collected from 82 countries that were systematically phenotyped for 34 traits.	N/A	Susan McCouch	Reference: Zhao-K, et al Nat Comm 2011 [Gramene Lit ID 54925]; Project website: Rice Diversity	Show Allele Data
RiceDiversity 44K SNP assay, 34 trait GWAS study, Nat Comm Sept 2011. MSU7 coordinates	A Rice Diversity Panel consists of 413 Asian rice representing all the major rice growing regions of the world were evaluated in the field.	N/A	Susan McCouch	Reference: Zhao-K, et al Nat Comm 2011 [Gramene Lit ID 54925]; Project website: Rice Diversity. LiftOver from MSU6->MSU7, 3/2012, RiceDiversity Project.	Show Allele Data

Related Stocks (2)

Stock Source	Seed Lot ID	Comments
NSGC	nsftv100
McCouch Lab	RA6308	RiceDiversity NSFTV

Traits (36)

Trait id	value	exp id
18833	2010-05-01	18
18834	2010-05-01	18
21406	10.60333333	47
21828	8.7	47
22250	absent	47
22672	3	47
23094	2.055	47
23516	5.944466667	47
23938	3.467779993	47
24360	2.893033333	47
24782	6.8989	47
25204	27.62222	47
25626	1.611111111	47
26048	122	47
26470	78	47
26892	84.11	47
27314	not dark	47
27736	not light	47
28158	absent	47
28580	5.340738082	47
29002	11.55555556	47
29424	27.62222222	47
29846	23.94444444	47
30268	2.978925155	47
30690	Not light	47
31112	1.666666667	47
31534	114.8888889	47
31956	8.138033333	47
32378	2.406	47
32800	5.032614201	47
33222	3.850530743	47
33644	2.440977983	47
34066	3.382633333	47
34488	6.501666667	47
34910	4.0133755	47
35332	6.958333334	47

Traits UOM (32)

Trait Name	Trait Protocol	LINK TO TRAIT VALUES
seed length with hull
amylose content
brown rice protein	Protein content in brown rice (dehulled grain with pericarp) as described in 54926
awn presence	Presence or absence of awns, frequency and length of awns along a panicle was evaluated
blast disease
brown rice ratio	Ratio of unpolished rice grain length to grain width was measured
brown rice length	Length of the dehulled, unpolished rice grain was measured
grain surface area	Surface area of the dehulled, unpolished rice grain was calculated.
grain width	Width of the dehulled, unpolished rice grain was measured
grain volume	Volume of the unpolished rice grain (dehulled) was measured
flag leaf length	Length of the flag leaf measured from leaf base to leaf tip
flag leaf lamina width	Width of the flag leaf measured at the widest portion of the leaf lamina
flowering time
hull color	Color of the hull was visually examinedexamined
leaf lamina pubescence	Presence or absence of hairs on the leaf blade surface was evaluated
floret number per inflorescence	Number of flowers (florets) on the primary panicle was counted
primary branch number	Number of primary branches along the panicle was counted
spikelet fertility	Percent of spikelets that filled and produced seeds determined as the ratio of seeds per panicle/spikelets per panicle
Panicle length	Panicle length was measured as the average number of centimeters from the panicle neck to the panicle tip, excluding awns.
Panicle number	Panicles per plant was calculated as the average number of panicles per plant at harvest.
pericarp color	Ten seeds per plant were dehulled and then visually inspected; PATO:0000322, PATO:0000323; ECO:0000002; GAZ:00004426
culm angle	Average angle of the plant culm with respect to the ground surface at maturity was measured
Plant height	Plant height was measured in centimeters from the soil surface to the tip of the tallest panicle, excluding the awns.
seed length	Length of the seed with hull was measured
seed length to width ratio	Ratio of seed length to seed width was measured
seed number	Number of seeds per panicle (inflorescence), determined by counting the number of filled spikelets along the main panicle
surface area of grain with hull	Surface area of the seed with hul was measured
volume of grain with hull	Volume of the seed with hull was measured
seed width	Width of the seed with hull was measured
straighthead	Rated visually based on floret sterility and panicle emergence on a scale from 1 (normal panicle emergence and less than 20% sterility) to 9 (stubby plants with no panicle emergence)
unfilled grain number
alkali digestion	Rice grains were treated with 1.7% KOH and scored for the extent of digestion of the starch based on its level of intactness.