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Release Notes
Oryza sativa Germplasm "77-2087"
| Accession Name | 77-2087 |
|---|---|
| Institute(s) Holding Accession | |
| Accession Number | HP504 |
| Synonym(s) | |
| Germplasm Type | Traditional cultivar/landrace |
| Genus | Oryza |
| Species | sativa |
| Subspecies | |
| Subtaxa | |
| Taxonomy Cross-Reference | GR_tax:013681 |
Experiments (1)
| Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
|---|---|---|---|---|---|---|
| Huang X, et al, Nat Genetics 2010 Nov. 842,474 SNPs* x 374 landraces, 14 phenotypes. *IRGSP4 coordinates. | GWAS study | N/A | Rice HaplotypeMap Project, National Center for Gene Research, CAS; www.ncgr.ac.cn/RiceHapMap | There were 514 germplasm reported by paper and stored in Gramene, but only 374 of these germplasm have genotype data. | Show Allele Data |
Related Stocks (1)
| Stock Source | Seed Lot ID | Comments |
|---|---|---|
| HP504 | Huang, X et al, Nat Gen, 2010 |
Traits (14)
| Trait id | value | exp id |
|---|---|---|
| 39090 | 0 | 21 |
| 39091 | 1 | 21 |
| 39092 | 1 | 21 |
| 39093 | 21 | |
| 39094 | 3 | 21 |
| 39095 | 10.276 | 21 |
| 39096 | 2.687 | 21 |
| 39097 | 66 | 21 |
| 39098 | 27.95 | 21 |
| 39099 | 0 | 21 |
| 39100 | 1 | 21 |
| 39101 | 32 | 21 |
| 39102 | 19 | 21 |
| 39103 | 30 | 21 |
Traits UOM (14)
| Trait Name | Trait Protocol | LINK TO TRAIT VALUES |
|---|---|---|
| pericarp color | ||
| hull color | ||
| apiculus color | ||
| amylose content | ||
| gelatinization temperature | ||
| grain length | UO:0000016; ECO:0000059; experimental phenotypic evidence; Measuring the average grain length of each cultivar | |
| grain width | UO:0000016; ECO:0000059; experimental phenotypic evidence; Measuring the average grain witdth of each cultivar | |
| splikelet number | ||
| grain weight | ||
| drought tolerance | ||
| Grain shattering | Shattering was estimated using five categories, 1-5 scale, ranging from non-shattering (seeds are difficult to pull off the panicle) to highly shattering (seeds fall freely without touching the panicle) at the time of harvest. | |
| leaf angle | ||
| tiller number | ||
| Days to heading | Days to heading was evaluated on 10 plants per row as the number of days from seeding to until 10% of the panicles had emerged. |
Collection Information
| Collector | |
|---|---|
| Collection Number | |
| Collection Source | |
| Collection Code | |
| Collection/Release date |
Locality
| Country | |
|---|---|
| ISO3166 Country Code | |
| State/Province | |
| City | |
| Locality | |
| Gazetteer Ontology | N/A |
| Elevation | |
| Latitude | NA |
| Longitude | NA |
| Map |
