Experiment "Evaluation of Genetic diversity in Rice Subspecies Using ..."

Title	Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers
Design	38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers
Polymorphism Type (1)	SSR
Allele Scoring Protocol (1)	PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard.
PI(s)	Mackill-D-J
Comments	Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002.

Germplasm (40)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
87Y550	n/a	David Mackill stock	CCRRF	Show Allele Data
Akitakomachi	PI558511	PI558511	IRRI	Show Allele Data
Arborio	PI388345	PI388345	IRRI	Show Allele Data
Black Gora	IRGC40275	IRGC40275	IRRI	Show Allele Data
Calmochi 102	n/a	David Mackill stock	CCRRF	Show Allele Data
Calrose	CIor8988	CIor8988	CCRRF	Show Allele Data
Daegwanbyeo	n/a	David Mackill stock	IRRI	Show Allele Data
GIZA176	IRTP 18216	IRTP18216	IRRI	Show Allele Data
GIZA178	IRTP 20912	IRTP20912	IRRI	Show Allele Data
GZ5121-5-2-1	n/a	David Mackill stock	IRRI	Show Allele Data
GZ5470-14-1-2	n/a	David Mackill stock	IRRI	Show Allele Data
Hirayana	n/a	David Mackill stock	IRRI	Show Allele Data
Hunan late ind	n/a	David Mackill stock	IRRI	Show Allele Data
IR 50R	n/a	David Mackill stock	IRRI	Show Allele Data
IR36	IRGC30416	RA832	McCouch Lab	Show Allele Data
IR40931	IR40931	IR40931	IRRI	Show Allele Data
Italica Livorno	PI291478	PI291478	IRRI	Show Allele Data
Katy	PI527707	PI527707	NSGC	Show Allele Data
Koshihikari	PI330464	PI330464	NSGC	Show Allele Data
L-202	n/a	David Mackill stock	CCRRF	Show Allele Data
L-203	PI547249	PI547249	CCRRF	Show Allele Data
Labelle	CIor9708	CIor9708	NSGC	Show Allele Data
Lemont	n/a	David Mackill stock	NSGC	Show Allele Data
M-103	n/a	David Mackill stock	CCRRF	Show Allele Data
M-201	CIor9980	CIor9980	CCRRF	Show Allele Data
M-202	PI494105	PI494105	CCRRF	Show Allele Data
M-203	PI514276	PI514276	CCRRF	Show Allele Data
M-204	PI559472	PI559472	CCRRF	Show Allele Data
M-401	CIor9975	CIor9975	CCRRF	Show Allele Data
Moroberekan	RA1416	RA1416	McCouch Lab	Show Allele Data
N22	IRGC6264	IRGC6264	IRRI	Show Allele Data
Newbonnet	PI474580	PI474580	NSGC	Show Allele Data
Oryza nivara-MacKill_sample	n/a	David Mackill stock	IRRI	Show Allele Data
Oryza rufipogon-IRGC105491	IRGC105491	IRGC105491	IRRI	Show Allele Data
S-201	CIor9974	CIor9974	CCRRF	Show Allele Data
Taipei 309	PI366153	RA5397	NSGC	Show Allele Data
Teqing	PI536047	RA5130	NSGC	Show Allele Data
Uz Ros 269	PI348905	PI348905	IRRI	Show Allele Data
WC 1403	n/a	David Mackill stock	IRRI	Show Allele Data
Yukihikari	PI637530	PI637530	IRRI	Show Allele Data

Markers 1 to 25 of 111. of 5 \| Next
Marker Name
RM1	Show Allele Data
RM10	Show Allele Data
RM105	Show Allele Data
RM126	Show Allele Data
RM127	Show Allele Data
RM13	Show Allele Data
RM130	Show Allele Data
RM135	Show Allele Data
RM136	Show Allele Data
RM137	Show Allele Data
RM142	Show Allele Data
RM152	Show Allele Data
RM153	Show Allele Data
RM155	Show Allele Data
RM156	Show Allele Data
RM160	Show Allele Data
RM167	Show Allele Data
RM169	Show Allele Data
RM17	Show Allele Data
RM170	Show Allele Data
RM171	Show Allele Data
RM172	Show Allele Data
RM173	Show Allele Data
RM177	Show Allele Data
RM178	Show Allele Data

Marker Name

RM1

Show Allele Data

RM10

Show Allele Data

RM105

Show Allele Data

RM126

Show Allele Data

RM127

Show Allele Data

RM13