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View Marker "chr3"

There is allele data for locus "chr3" from 6 experiments.


Title Design Polymorphism Type Allele Scoring Protocol PI(s) Comments Data
~160K SNPs x 20 accessions (McNally 2009 PNAS/Oryzasnp Project) SNP discovery and introgression study with 20 rice accesions SNP genotyping array McNally et. al.; oryzaSNP.org Reference: McNally et. al., PNAS 2009 Jul 28;106(30):12273-8. Show Allele Data
'1536 chip' - 1311 SNPs x 395 rice accessions (Zhao et. al, PLoS, 2010; ricediversity.org). MSU6 coordinates Genotyping of 395 O. sativa accessions with 1536 SNPs SNP genotyping array Zhao K et. al.; ricediversity.org Reference: Zhao K et. al., PLoS One, May 2010 vol 5, issue 5 Show Allele Data
Huang X, et al, Nat Genetics 2010 Nov. 842,474 SNPs* x 374 landraces, 14 phenotypes. *IRGSP4 coordinates. GWAS study SNP genotyping array Rice HaplotypeMap Project, National Center for Gene Research, CAS; www.ncgr.ac.cn/RiceHapMap There were 514 germplasm reported by paper and stored in Gramene, but only 374 of these germplasm have genotype data. Show Allele Data
RiceDiversity 44K SNP assay, 34 trait GWAS study, Nat Comm Sept 2011. MSU6 coordinates A genome-wide association study based on genotyping 44,100 SNP variants across 413 diverse accessions of O. sativa collected from 82 countries that were systematically phenotyped for 34 traits. SNP genotyping array Susan McCouch Reference: Zhao-K, et al Nat Comm 2011 [Gramene Lit ID 54925]; Project website: Rice Diversity Show Allele Data
RiceDiversity 44K SNP assay, 34 trait GWAS study, Nat Comm Sept 2011. MSU7 coordinates A Rice Diversity Panel consists of 413 Asian rice representing all the major rice growing regions of the world were evaluated in the field. SNP genotyping array Susan McCouch Reference: Zhao-K, et al Nat Comm 2011 [Gramene Lit ID 54925]; Project website: Rice Diversity. LiftOver from MSU6->MSU7, 3/2012, RiceDiversity Project. Show Allele Data
'1536 chip' - 1311 SNPs x 395 rice accessions (Zhao et. al, PLoS, 2010; ricediversity.org). MSU7 coordinates Genotyping of 395 O. sativa accessions with 1536 SNPs SNP genotyping array Zhao K et. al.; ricediversity.org Reference: Zhao K et. al., PLoS One, May 2010 vol 5, issue 5. LiftOver from MSU6->MSU7, 3/2012 Show Allele Data