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Sequence and assembly

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  • Contigs
    Track showing underlying assembly contigs.
  • Sequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

  • IGGP
    Gene annotation by IGGP through a process of automatic and manual curation

mRNA and protein alignments

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  • EST Cluster (Arabidopsis)
    Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
  • EST Cluster (Dicot)
    Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
  • EST Cluster (Maize)
    Alignments of EST clusters (Unigenes, Gene Indices) from Maize
  • EST Cluster (Monocot)
    Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
  • EST Cluster (Rice)
    Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species
  • EST Cluster (grape)
    Alignments of EST clusters (Unigenes, Gene Indices) from hgrape

    Variation

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      Variation sets

        Somatic mutations

          Comparative genomics

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            Oligo probes

              Repeat regions

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                Information and decorations

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                • %GC
                  Shows percentage of Gs & Cs in region
                • Scale bar
                  Shows the scalebar
                • Ruler
                  Shows the length of the region being displayed
                • Variation Legend
                • Alignment Difference Legend
                • Gene Legend
                • Methylation Legend
                • Disabled track summary
                  Show counts of number of tracks turned off by the user
                • Information
                  Details of the region shown in the image
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