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Sequence and assembly

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  • OnContigs
    Track showing underlying assembly contigs.
  • OnSequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.
Enable/disable all GRC alignments
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      Genes and transcripts

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      • Expanded with labels
        Gene annotation by JGI through a process of automatic and manual curation
      • Expanded with labels
        An alternative set of miRNA gene sequences from miRBase as aligned to the reference genome

      Prediction transcripts

      mRNA and protein alignments

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      • StackedEST Cluster (Arabidopsis)
        Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
      • StackedEST Cluster (Dicot)
        Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
      • StackedEST Cluster (Maize)
        Alignments of EST clusters (Unigenes, Gene Indices) from Maize
      • StackedEST Cluster (Monocot)
        Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
      • StackedEST Cluster (Rice)
        Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

      Variation

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        Enable/disable all Structural variants

          Copy number variant probes

            Somatic mutations

            Somatic variants

              Somatic structural variants

                Comparative genomics

                Multiple alignments

                  Enable/disable all BLASTz/LASTz alignments

                    Repeat regions

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                      Information and decorations

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                      • On%GC
                        Shows percentage of Gs & Cs in region
                      • OnScale bar
                        Shows the scalebar
                      • OnRuler
                        Shows the length of the region being displayed
                      • OnVariation Legend
                      • OnAlignment Difference Legend
                      • OnGene Legend
                      • OnDisabled track summary
                        Show counts of number of tracks turned off by the user
                      • OnInformation
                        Details of the region shown in the image
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