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Sequence and assembly

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  • Contigs
    Track showing underlying assembly contigs.
  • Sequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.
Enable/disable all GRC alignments
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      Genes and transcripts

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      • JGI genes
        Gene annotation by JGI through a process of automatic and manual curation
      • miRNA
        An alternative set of miRNA gene sequences from miRBase as aligned to the reference genome

      Prediction transcripts

      mRNA and protein alignments

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      • EST Cluster (Arabidopsis)
        Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
      • EST Cluster (Dicot)
        Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
      • EST Cluster (Maize)
        Alignments of EST clusters (Unigenes, Gene Indices) from Maize
      • EST Cluster (Monocot)
        Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
      • EST Cluster (Rice)
        Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

      Variation

      Enable/disable all Structural variants
        Enable/disable all Phenotype annotations

          Somatic mutations

          Somatic variants

            Somatic structural variants

              Comparative genomics

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                Repeat regions

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                  Information and decorations

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                  • %GC
                    Shows percentage of Gs & Cs in region
                  • Scale bar
                    Shows the scalebar
                  • Ruler
                    Shows the length of the region being displayed
                  • Structural Variation Legend
                  • Alignment Difference Legend
                  • Gene Legend
                  • Disabled track summary
                    Show counts of number of tracks turned off by the user
                  • Information
                    Details of the region shown in the image
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