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Sequence and assembly

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  • Contigs
    Track showing underlying assembly contigs.
  • Sequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

GRC alignments

    Genes and transcripts

    • JGI Genes
      Gene annotation by JGI through a process of automatic and manual curation

    mRNA and protein alignments

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    • EST Cluster (Arabidopsis)
      Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
    • EST Cluster (Dicot)
      Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
    • EST Cluster (Maize)
      Alignments of EST clusters (Unigenes, Gene Indices) from Maize
    • EST Cluster (Monocot)
      Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
    • EST Cluster (Poplar)
      Alignments of EST clusters (Unigenes, Gene Indices) from poplar (Populus) species
    • EST Cluster (Rice)
      Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

    Comparative genomics

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      Oligo probes

        Repeat regions

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          Information and decorations

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          • %GC
            Shows percentage of Gs & Cs in region
          • Scale bar
            Shows the scalebar
          • Ruler
            Shows the length of the region being displayed
          • Alignment Difference Legend
          • Gene Legend
          • Methylation Legend
          • Disabled track summary
            Show counts of number of tracks turned off by the user
          • Information
            Details of the region shown in the image
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