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Sequence and assembly

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  • OnContigs
    Track showing underlying assembly contigs.
  • OnSequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

GRC alignments

    Genes and transcripts

    • Expanded with labelsJGI Genes
      Gene annotation by JGI through a process of automatic and manual curation

    mRNA and protein alignments

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    • StackedEST Cluster (Arabidopsis)
      Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
    • StackedEST Cluster (Dicot)
      Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
    • StackedEST Cluster (Maize)
      Alignments of EST clusters (Unigenes, Gene Indices) from Maize
    • StackedEST Cluster (Monocot)
      Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
    • StackedEST Cluster (Poplar)
      Alignments of EST clusters (Unigenes, Gene Indices) from poplar (Populus) species
    • StackedEST Cluster (Rice)
      Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

    Comparative genomics

    Multiple alignments

      Enable/disable all BLASTz/LASTz alignments

        Oligo probes

          Repeat regions

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            Information and decorations

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            • On%GC
              Shows percentage of Gs & Cs in region
            • OnScale bar
              Shows the scalebar
            • OnRuler
              Shows the length of the region being displayed
            • OnAlignment Difference Legend
            • OnGene Legend
            • OnMethylation Legend
            • OnDisabled track summary
              Show counts of number of tracks turned off by the user
            • OnInformation
              Details of the region shown in the image
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