About Oryza sativa
Oryza sativa (rice) is the staple food for 2.5 billion people. After maize, it is the grain with the second highest worldwide production. In addition to its agronomic importance, Oryza sativa is also an important biological model species for monocot plants and major cereal crops such as maize, wheat, barley and sorghum. Oryza sativa has a compact genome of ~500 Mbp (n=12) compared with the multi-gigabase genomes of maize, wheat and barley. Read more ...
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
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Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Variation
What can I find? Short sequence variants.
More about variation in Oryza sativa
More about variation in Ensembl Plants
Download all variants (GVF)
Regulation
What can I find? Microarray annotations.
More about regulation in Oryza sativa
More about the Ensembl Plants microarray annotation strategy
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene/Ensembl Genomes projects include:- The standard set of Gramene analyses detailed here.