Oryza officinalis

Oryza officinalis

About Oryza officinalis

Oryza officinalis (CC genome type) is a wild rice, Perennial, erect, and usually rhizomatous grass of variable height; panicles open, basal panicle branches whorled with spikelets inserted half way or more from base; spikelets 4.3-8.8 mm long and 2-3.3 mm wide; anthers around 1.5-4.5 mm long.

More information and statistics

View karyotype Example region

Genome assembly: BAC.Sanger.1.1

More information and statistics

Download DNA sequence (FASTA)

Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analysis

Download alignments (EMF)

Example gene Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins (FASTA)

Update your old Ensembl IDs

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Gramene/Ensembl Genomes Annotation

Additional annotations generated by the Gramene project include:

  • Gene phylogenetic trees with other Oryza speices and outgroup species: Leersia perrieri, Brachypodium distachyon, Arabidopsis thaliana and Arabidopsis thaliana, see example .
  • Blastz Whole Genome Alignment to Oryza sativa Japonica (MSU6), see example.
  • Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
  • Identification of various repeat features from MIPS and AGI repeat libraries