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Current Release: OMAP Chromosome 3 Short Arm (BB genome type)
A minimum tiling path of BAC clones was selected across the short arm of chromosome 3 of each of the Oryza minuta BB subgenomes using a heavily manually edited physical map. BAC clones were shotgun Sanger sequenced to 8x coverage and phase II finished. Assembly of the tile sequence was performed manually.
Additional annotations generated by the Gramene project include:
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see more.
- Identification of various repeat features from MIPS and AGI repeat libraries
- Ab initio gene prediction with program fgenesh
- Pairwise Whole genome alignments (blastz-chain-net) with Oryza sativa Japonica
- Phylogenetic gene tree with other gramene34 species, with ortholog and paralog predictions
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