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Sequence and assembly

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  • OnContigs
    Track showing underlying assembly contigs.
  • OnSequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

Markers

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      Genes and transcripts

      Genes

      • Expanded with labelsBGI Genes
        Gene annotation by BGI through a process of automatic and manual curation

      Prediction transcripts

      mRNA and protein alignments

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      • StackedEST Cluster (Arabidopsis)
        Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
      • StackedEST Cluster (Dicot)
        Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
      • StackedEST Cluster (Maize)
        Alignments of EST clusters (Unigenes, Gene Indices) from Maize
      • StackedEST Cluster (Monocot)
        Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
      • StackedEST Cluster (Rice)
        Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

        Variation

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          Somatic mutations

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            Comparative genomics

            Multiple alignments

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                Oligo probes

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                  Repeat regions

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                    Information and decorations

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                    • On%GC
                      Shows percentage of Gs & Cs in region
                    • OnScale bar
                      Shows the scalebar
                    • OnRuler
                      Shows the length of the region being displayed
                    • OnVariation Legend
                    • OnAlignment Difference Legend
                    • OnGene Legend
                    • OnMethylation Legend
                    • OnDisabled track summary
                      Show counts of number of tracks turned off by the user
                    • OnInformation
                      Details of the region shown in the image
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