About Oryza glumaepatula
Oryza glumaepatula (AA genome type) is a wild rice, perennial, tufted, and scrambling grass with brittle culm near the base of plants; open panicles; spikelets about 6.6-11 mm long and 1.9-2.5 wide, with awns 6-16 cm long; anthers usually 2-5 mm long occupying 3/4 of the spikelets
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene project include:
- Gene phylogenetic trees with other Oryza speices and outgroup species:Leersia perrieri, Brachypodium distachyon, Arabidopsis thaliana and Arabidopsis thaliana, see example .
- Blastz Whole Genome Alignment to Oryza sativa Japonica (MSU6), see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features from MIPS and AGI repeat libraries