Oryza barthii
Oryza barthii
About Oryza barthii
Oryza barthii (AA genome type) is a grass in the rice genus Oryza, it is the progenitor of cultivated Oryza glaberrima, African rice.It is annual and erect to semi-erect grass; leaves with short ligule (<13 mm); panicles compact to open, rarely having secondary branching; spikelets large, 7.7-12.3 mm long and 2.3-3.5 mm wide, with strong awns (up to 20 cm long), usually red; anthers 1.5-3 mm long.
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Update your old Ensembl IDsVariation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene project include:
- Gene phylogenetic trees with other Oryza speices and outgroup species:Leersia perrieri, Brachypodium distachyon, Arabidopsis thaliana and Arabidopsis thaliana, see example .
- Blastz Whole Genome Alignment to Oryza sativa Japonica (MSU6), see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features from MIPS and AGI repeat libraries