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Gramene Genomes
Gramene Anything
Summary
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Important Notice
We now use Blat as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Ticket not found
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Arabidopsis_lyrata
Arabidopsis_thaliana
Brachypodium_distachyon
Brassica_rapa
Chlamydomonas_reinhardtii
Cyanidioschyzon_merolae
Glycine_max
Hordeum_vulgare
Leersia_perrieri
Medicago_truncatula
Musa_acuminata
Oryza_barthii
Oryza_brachyantha
Oryza_glaberrima
Oryza_glumaepatula
Oryza_granulata
Oryza_indica
Oryza_longistaminata
Oryza_meridionalis
Oryza_minutabb
Oryza_minutacc
Oryza_nivara
Oryza_officinalis
Oryza_punctata
Oryza_rufipogon3s
Oryza_sativa
Physcomitrella_patens
Populus_trichocarpa
Selaginella_moellendorffii
Setaria_italica
Solanum_lycopersicum
Solanum_tuberosum
Sorghum_bicolor
Triticum_aestivum
Vitis_vinifera
Zea_mays
dna database
protein database
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl plants databases, offering access to both BLAST and BLAT programs.
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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Personal Data