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Sequence and assembly

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  • OnContigs
    Track showing underlying assembly contigs.
  • OnSequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

Simple features

    Genes and transcripts

    • Expanded with labelsNon-coding RNA genes annotated in ENA
      This track comprises multiple analyses; Non-coding RNA genes annotated in ENA; Protein coding genes annotated in ENA

    mRNA and protein alignments

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    • StackedChlamydomonas EST
      Genomic alignments of Chlamydomonas "Expressed Sequence Tags" (ESTs) from dbEST
    • StackedEST Cluster (Arabidopsis)
      Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
    • StackedEST Cluster (Chlamydomonas)
      Alignments of EST clusters (Unigenes, Gene Indices) from Chlamydomonas species
    • StackedEST Cluster (Maize)
      Alignments of EST clusters (Unigenes, Gene Indices) from Maize
    • StackedEST Cluster (Rice)
      Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

      Comparative genomics

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        Repeat regions

          Information and decorations

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          • On%GC
            Shows percentage of Gs & Cs in region
          • OnScale bar
            Shows the scalebar
          • OnRuler
            Shows the length of the region being displayed
          • OnAlignment Difference Legend
          • OnGene Legend
          • OnDisabled track summary
            Show counts of number of tracks turned off by the user
          • OnInformation
            Details of the region shown in the image
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