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Export Configuration - Feature List
Gene to export:
BRADI0007S00200
Output:
BED Format
FASTA sequence
CSV (Comma separated values)
Tab separated values
Gene Transfer Format (GTF)
Generic Feature Format
Generic Feature Format Version 3
EMBL
GenBank
PhyloXML from Compara
PhyloXML from Pan-taxonomic Compara
OrthoXML from Compara
OrthoXML from Pan-taxonomic Compara
Pipmaker / zPicture format
Vista Format
*
Strand:
Feature strand
Forward strand
Reverse strand
*
5' Flanking sequence (upstream):
*
(Maximum of 1000000)
3' Flanking sequence (downstream):
*
(Maximum of 1000000)
Fields marked
*
are required
Options for BED Format
Select/deselect all:
Variation features:
Gene information:
Repeat features:
Similarity features:
Prediction features (genscan):
Uploaded Data:
Options for FASTA sequence
Genomic:
Unmasked
Repeat Masked (soft)
Repeat Masked (hard)
5' Flanking sequence
3' Flanking sequence
5' and 3' Flanking sequences
None
*
Select/deselect all:
cDNA:
Coding sequence:
Peptide sequence:
Exons:
Introns:
Fields marked
*
are required
Options for CSV (Comma separated values)
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Variation features:
Gene information:
Options for Tab separated values
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Variation features:
Gene information:
Options for Gene Transfer Format (GTF)
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Variation features:
Gene information:
Options for Generic Feature Format
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Variation features:
Probe features:
Gene information:
Options for Generic Feature Format Version 3
Select/deselect all:
Gene information:
Transcripts:
Exons:
Introns:
Coding sequences:
Options for EMBL
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Contig Information:
Variation features:
Marker features:
Gene Information:
Vega Gene Information:
EST Gene Information:
Options for GenBank
Select/deselect all:
Similarity features:
Repeat features:
Prediction features (genscan):
Contig Information:
Variation features:
Marker features:
Gene Information:
Vega Gene Information:
EST Gene Information:
Options for PhyloXML from Compara
Select/deselect all:
cDNA rather than protein sequence:
Aligned sequences with gaps:
Omit sequences:
Options for PhyloXML from Pan-taxonomic Compara
Select/deselect all:
cDNA rather than protein sequence:
Aligned sequences with gaps:
Omit sequences:
Options for OrthoXML from Compara
Treat not supported duplications as speciations (makes a non species-tree-compliant tree):
Options for OrthoXML from Pan-taxonomic Compara
Treat not supported duplications as speciations (makes a non species-tree-compliant tree):
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