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Sequence and assembly

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  • OnContigs
    Track showing underlying assembly contigs.
  • OnSequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

Genes

  • Expanded with labelsJGI Genes
    Gene annotation by JGI through a process of automatic and manual curation

Prediction transcripts

mRNA and protein alignments

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  • StackedEST Cluster (Arabidopsis)
    Alignments of EST clusters (Unigenes, Gene Indices) from Arabidopsis
  • StackedEST Cluster (Dicot)
    Alignmments of EST clusters (Unigenes, Gene Indices) from all dicot species
  • StackedEST Cluster (Maize)
    Alignments of EST clusters (Unigenes, Gene Indices) from Maize
  • StackedEST Cluster (Monocot)
    Alignments of EST clusters (Unigenes, Gene Indices) from monocot species
  • StackedEST Cluster (Rice)
    Alignments of EST clusters (Unigenes, Gene Indices) from rice (Oryza) species

Comparative genomics

Multiple alignments

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      Repeat regions

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        Information and decorations

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        • On%GC
          Shows percentage of Gs & Cs in region
        • OnScale bar
          Shows the scalebar
        • OnRuler
          Shows the length of the region being displayed
        • OnAlignment Difference Legend
        • OnGene Legend
        • OnDisabled track summary
          Show counts of number of tracks turned off by the user
        • OnInformation
          Details of the region shown in the image
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