![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Protein Home |
Advanced Search |
Search by Pfam or PROSITE |
Browse by GO Slim |
Documents |
Tutorial |
FAQ |
Help
Sorghum bicolor protein "C5YFJ3" (DNA ligase) | Accession | C5YFJ3 | ||
|---|---|---|---|
| Species | Sorghum bicolor [ GR_tax:014159 ] | ||
| Name | DNA ligase | ||
| Symbol | Sb06g027820 | ||
| Synonyms (1) | SORBIDRAFT_06g027820 | ||
| E.C. Numbers (1) | 6.5.1.1 | ||
| Gene Names (2) |
|
||
| Organelle | Not available | ||
| Best Hits To TIGR Rice Gene Models (0) | None | ||
| IRGSP/RAP Genes (0) | None | ||
| Source | TREMBL | ||
| GenBank Accessions (1) | EES12813 | ||
| UniProt Accession (Sequence) | C5YFJ3 | ||
| Cultivar | None. |
Associated Ontologies (6) | Term Type | Term | Reference | Evidence | ||||
|---|---|---|---|---|---|---|---|
| Molecular Function | ATP binding (GO:0005524) | Jaiswal-P et al., 2003 |
| ||||
| DNA ligase (ATP) activity (GO:0003910) | Jaiswal-P et al., 2003 |
| |||||
| Biological Process | DNA repair (GO:0006281) | Jaiswal-P et al., 2003 |
| ||||
| DNA replication (GO:0006260) | Jaiswal-P et al., 2003 |
| |||||
| DNA recombination (GO:0006310) | Jaiswal-P et al., 2003 |
| |||||
| Cellular Component | intracellular (GO:0005622) | Jaiswal-P et al., 2003 |
|
Keywords (7) Similarity to Other Proteins (22) | Viridiplantae Green plants -Embryophytes (plants) -Magnoliophytes (flowering plants) -Monocots | Grasses | Rice | Maize | Sorghum | Wheat | Barley | Rye | Oat | Sugarcane -Dicots | Brassicaceae | Arabidopsis | Fabaceae (Legumes) | Solanaceae | Cucurbitaceae |
| Others : Fungi | Metazoa |
| 3D protein structures : BLink from NCBI |
Protein Features (10) | Pfam (Info) | PF01068; DNA_ligase | All Members of this Family | |
|---|---|---|---|
| PF04679; DNA_ligase_A_C | All Members of this Family | ||
| PF00533; BRCT | All Members of this Family | ||
| Prosite (Info) | PS00333; DNA_LIGASE_A2 | Sequence info. not available All Members of this Family |
|
| PS00697; DNA_LIGASE_A1 | Sequence info. not available All Members of this Family |
||
| PS50160; DNA_LIGASE_A3 | Sequence info. not available All Members of this Family |
||
| PS50172; BRCT | Sequence info. not available All Members of this Family |
||
| Physio-chemical features | C5YFJ3 | ||
| ProtoMap (Info) | C5YFJ3_SORBI | ||
| Feature Type | Residues (From - To) | Evidence | |
| Signal peptide | 1 - 7 | Jaiswal-P et al., 2002 | |
Database Cross-References (0)
